Fatih Abasiyanik is a staff scientist at Single Cell Immunophenotyping Core/Chevrier Lab, Pritzker School of Molecular Engineering, The University of Chicago.
This website contains his personal interests, work experiences, skills, news, contact info, etc.
Contact Mailing Address: PME, IGSB, 10120, 900 E 57th, 60637, Chicago, IL, US Email: abasiyanik at uchicago dot edu Tel: 773.834.8521 Linkedin: https://www.linkedin.com/in/abasiyanik
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Fatih Abasiyanik has been living in Chicago since 2017. He is a staff scientist at the Single Cell Immunophenotyping Core and Core Manager. He published +40 papers, supervised over 25 graduate students, and took a critical role (adviser, partner, etc.) in more than 7 start-up companies. He recently filled out a provisional patent application.
Announcement

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Research Interest:
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- Infectious Diseases
- Sepsis and Septic Shock
- Helicobacter pylori-Gastrointestinal Diseases
- HPV and head/neck cancer
- SARS CoV-2
- NGS Technologies
- Infectious Diseases
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- Development of bioanalytical tools/assays/methods (immunoassays, DNA-based PCR technologies, NGS methods, biosensors, etc.) to analyze biomarkers (i.e., DNA, RNA, protein) in biological samples (saliva, blood, food, and environmental samples).
- Host biomarker analysis (e.g., cytokines)
- Pathogen biomarker detection (e.g., DNA, RNA, antigen)
- Food analysis and food policy
- Pollutant detection
- Data Science and Analysis of Medical Data
- Prognostic and diagnostic-related data analysis
- Prediction of disease outcome based on internal and external data (measurements) (i.m.: symptoms, lab data, patient info, etc.) (e.m.: environmental data, weather, and related data, etc.)
- Formal/Informal biotech education and training of educators
- Biotech Technology Transfer and Enterpronuial Ecosystem
- Design Thinking
- Idea incubation
- Third Generation Universities and design of the undergraduate curriculum to graduate students as a part of the entrepreneurial ecosystem.
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Working Experience:
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- Staff Scientist, Single-Cell Immunophenotyping Core, and Chevrier Lab, The University of Chicago, 2021-current
- Research Professional 2017 – 2021
PME, The University of Chicago, Chicago, IL, USA - Associate Prof and Vice Dean of Medical School August/2016 – January /2017
Alatoo International University, Bishkek, Kyrgyzstan (KG) - Associate Prof, Program Chair of Genetics and Bioengineering Department December/2014 – July/2016
Engineering Faculty, Fatih University, Istanbul, Turkey - Associate Prof, Founding Chair of Biotechnology Ph.D. Program January /2011 – December/2014
Engineering Faculty, Fatih University, Istanbul, Turkey - Associate Prof, Vice Dean, Engineering Faculty October /2011 – December/2012Fatih University, Istanbul, Turkey
- Assistant/Assoc. Prof, Vice-Chair, Genetics, and Bioengineering Department January /2007 – December/2014
Fatih University, Istanbul, Turkey - Assistant. Prof, Chairman, Biology Department March/2005 – August/2007
Fatih University, Istanbul, Turkey - Instructor, Biology Department July/2004 – February/2005
Fatih University, Istanbul, Turkey - Research and Teaching Assistant, Biology Department December/1997 – July/2004
Fatih University, Istanbul, Turkey - STEM and Biology Teacher, August/1992 – July/1997
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Education:
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- BSE, Ankara University, Agricultural Engineering, 1991
- MSc, Fatih University, Medical Microbiology, 2000
- Ph.D., Gebze Institute of Technology, Biochemistry, 2005
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Courses/ Workshops:
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- Java Programing Language
- SPLC related tools: Selenium, Maven, Cucumber, TestNG, etc.
- Entrepreneurship for Science and Medicine, Polsky Center for Entrepreneurship and Innovation at Chicago Booth, The University of Chicago
- Intro to Venture Capital: A toolkit for analyzing and financing startups, Polsky Center for Entrepreneurship and Innovation at Chicago Booth, The University of Chicago
- Certificated Work training on different topics at the Chicago University
- Animal care and use procedure certification
- Data security and privacy certification
- Rodent euthanasia
- Occupational health and safety information module for animal users
- Human Research Course for the staff
- Harassment and Discrimination Prevention
- Whole-genome sequencing of bacterial genomes: tools and applications course, Coursera, 2019
- Phyton Programming Essentials Course, Coursera, 2019
- Phyton for Data Science Course, Coursera, 2019
- Phyton for Data Science and AI Course, Coursera, 2019
- Open Meeting Act on-line training, Office of the Attorney General State of Illinois, 2017
- Databases and SQL for Data Science Course
- World Future Forum, Chicago, US 04/25-26/2019
- Illinois Charter School Conference 2018, Chicago, US 11/15/2018
- OPEN Chicago Annual Business Conference 2018, Chicago, US 11/10/2018
- Open Meeting Act on-line training, Office of the Attorney General State of Illinois, 2017
- Halal Food Conference, Malaysia 10/15/2015
- Computer-Aided Drug Design, Koc University, 2/2-5/2007
- The use of bioinformatics in genomics workshop, COMSTECH, Pakistan 8/19/-9/2/ 2006
- The practical and theoretical courses on the basic protein purification techniques, Genetic Engineering and Biotechnology Research Institute, TUBITAK, Gebze, Turkey 9/2-6/2002
- Pedagogic-Formation Summer School, Marmara University, Istanbul, Turkey June -August 1995
- Teaching Biology Workshop, Istanbul, Turkey July 1995
- STEM education Workshop, Almaty, Kazakhstan January 1993
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