Biospecimen Management

Newsletter

BIOBANKING AT THE UNIVERSITY OF CHICAGO MEDICINE

The effective procurement, storage, distribution, and utilization of human biospecimens are critical to the mission of the UChicago Medicine. Established in 2001, the Human Tissue Resource Center (HTRC) (https://voices.uchicago.edu/htrc) is a College of American Pathologists (CAP)-accredited core facility.

Supported by the University of Chicago Comprehensive Cancer Center (UCCCC) and the Biological Sciences Division (BSD), the HTRC operates under the oversight of the Office of Shared Research Facilities (OSRF). Our mission is to provide investigators with a centralized infrastructure to optimize the efficiencies and costs related to biospecimen-based research.

The HTRC comprises four integrated sub-cores (Biospecimen Bank, Laser Capture Microdissection, Digital Pathology, and Histology Services) and functions as an integrated unit. Thus, duplication of personnel, equipment, and information systems is avoided, and coordination of activities is assured. The HTRC procures a wide spectrum of clinically-annotated human biospecimens including tissue, plasma, serum, saliva, urine, lymphocyte DNA, and PBMCs.

In addition, we provide a wide array of downstream histology services for human and animal tissues including the processing of tissues to paraffin blocks, sectioning of paraffin and frozen sections, routine H&E staining, and immunohistochemistry (IHC), immunofluorescence (IF), in situ hybridization (ISH), tissue microarray (TMA) construction, and digital whole slide scanning.

Currently, the HTRC has an inventory of over 485,000 samples that have been banked for 488 unique investigator-initiated and institutional-initiated protocols. The majority of the samples are linked to annotated clinical data from IRB-approved consented protocols.

A high-level inventory of human biospecimens is found below. 

 
Sample type No. of samples
Plasma 136,940
Serum 105,446
RBCs 34,059
BMMCs 1,224
Buffy Coat 1,265
Whole Blood 36,351
PAXgene Blood 1,029
Clot 6,752
Streck Sediment 549
EDTA Sediment 1,141
DNA 61,487
gDNA 1,351
PBMC 20,431
Supernatant 638
Saliva 5,625
Urine 2,154
Feces 3,049
OCT Tissue 21,432
Snap Tissue 9,953
FFPE 15,782
HE Slide 478
Ambient Slide 4,311
Frozen Slide 9,726
OTHER 4,405

For additional information, please contact

Rachel Poon
Biobank Technical Director
rpoon@bsd.uchicago.edu

Terri Li (pictured below)
Histology Technical Director
tli1@bsd.uchicago.edu

Dr. Mark Lingen
HTRC Faculty Director
mark.lingen@bsd.uchicago.edu

YOUCHICAGO BIOSPECIMEN COLLECTION

What is YouChicago?

The majority of biospecimens are currently collected under investigator-initiated protocols. However, UChicago Medicine is committed to the equitable collection and distribution of biospecimens for the entire University of Chicago research community. To ensure this, the YouChicago Biospecimen Collection Protocol was launched in 2018 with support from the UCCCC. Its aim is to facilitate translational cancer research by the entire UChicago research community by collecting high-quality biospecimens for future scientific purposes.

What does YouChicago do? 

YouChicago consents primarily UChicago Medicine surgery patients under an institutional umbrella protocol for donating solid tumor tissues and blood specimens linked to clinical data. The protocol also collects fresh surgical tissue for the generation of organoids and cell lines. YouChicago collaborates with all clinical departments/sections. Biospecimens are processed, stored, tracked, and retrieved by the HTRC.

What has YouChicago collected? 

Since its creation, YouChicago has enrolled 1,080 patients with bladder (n=67), endometrial (n=123), gastrointestinal (n=128), neuroendocrine and sarcoma (n=86), prostate (n=438), renal (n=193) and thoracic cancers (n=45).

Tissue samples are available from bladder (n=20), endometrial (n=48), gastrointestinal (n=66), neuroendocrine and sarcoma (n=44), prostate (n=68), renal (n=122) and thoracic (n=26) cancers. There is also blood available (with no matching tissue) from 338 individuals.


How can investigators access biospecimens? 

Interested investigators should email youchicagobiobank@uchicagomedicine.org for additional information before placing a request. The Biospecimen Withdrawal Request Form can be accessed at the following link: https://voices.uchicago.edu/cccbiospecimens/biospecimen-requests/. Biospecimen withdrawal requests are reviewed by the UCCCC Biospecimen Review Committee and the YouChicago Research Coordinator as described in the Biospecimen Access and Utilization Policy.

Can YouChicago help me collect biospecimens? 

YouChicago is looking forward to assisting investigators in collecting samples under our umbrella protocol. Biospecimens routinely collected include tumor/normal tissue and blood for serum and DNA isolation. Collection of other sample types, expedited delivery to Pathology, and consenting/coordination for other Investigator-Initiated projects are available through Biofluids for a user fee ($62.50/patient for consenting, $50/patient for coordination, and $50/patient for special delivery). Services are subject to availability.

How do I contact YouChicago?

Please email youchicagobiobank@uchicagomedicine.org. Queries will be reviewed by Dr. Walter Stadler (YouChicago PI), Dr. Lara Kozloff (YouChicago Clinical Coordinator), and Jackie Ramírez (Technical Director of Biofluids).

NEW BIOBANKING POLICIES & FINANCIAL INCENTIVES FOR UCCCC-SUPPORTED BIOBANKING PROTOCOLS

UCCCC is pleased to announce two new biobanking policies and financial incentives that will benefit translational cancer investigators.

Cancer biospecimens are collected by UCCCC investigators for a variety of purposes to support their research. Two new UCCCC biobanking policies aim at supporting a broad range of translational cancer investigators including those not affiliated with any collection protocols. The policies intend to create equitable use of biobanking resources, create a more representative collection of biospecimens across cancer disease areas, enhance the efficiency of the UCCCC biospecimen banks, and assure that the use of biospecimens is scientifically justified.

The Biobanking Policy and Biospecimen Access and Utilization Policy can be accessed at https://voices.uchicago.edu/cccbiospecimens/. Key excerpts are included below. 

BIOBANKING POLICY INCORPORATING FINANCIAL INCENTIVES FOR INVESTIGATORS
  • Applies to all biobanking protocols that receive financial support from the UCCCC above and beyond the general support UCCCC provides to the HTRC
  • Aims at centralizing biospecimen collection protocols through financial incentives
  • Describes the creation of a standing Biospecimen Review Committee with full authority over all UCCCC biospecimen policies and procedures
  • Includes financial incentives for two biobank protocol categories:
    • Tier 1 protocols (umbrella protocols that are not disease- or project-specific) will qualify for a full subsidy from UCCCC for (1) consenting, coordination, and special delivery through Biofluids, and (2) processing, tracking, and distribution of specimens through HTRC. Users must use HTRC for biospecimen processing, tracking, and storage.

 YouChicago is the only current Tier 1 protocol. Investigators interested in creating a new Tier 1 protocol should contact Dr. Walter Stadler (wstadler@uchicagomedicine.org).

  •  Tier 2 protocols (disease-specific protocols that share their specimen inventory with the UCCCC) will qualify for a 30% subsidy applicable to HTRC biobanking fees. This is in addition to the 10% discount already offered for UCCCC members. Users must use HTRC for biospecimen processing, tracking, and storage.
 
There are currently no Tier 2 protocols. Investigators interested to have their protocol considered as a Tier 2 protocol should contact Jackie Ramírez (jramirez@chicagomedicine.org), and the Biospecimen Review Committee will consider the request.
BIOSPECIMEN ACCESS AND UTILIZATION POLICY
  • Applies to all biospecimen collection protocols for which a UCCCC member is the PI
  • Aims at creating equitable use of biospecimens and assuring that use of biospecimens is scientifically justified 
  • Describes in detail the mandatory scientific review process for biospecimen withdrawal
  • Describes what happens if a biospecimen protocol PI relinquishes responsibility for a biobanking protocol
  • Explains the HTRC process for handling specimen transfers to investigators

For additional information, please contact Dr. Walter Stadler (Dean for Clinical Research, BSD; UCCCC Biospecimen Committee Chair, wstadler@uchicagomedicine.org). 

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