Equipment
In addition to our main instruments, HDID offers other tools to support your research. These include:
- Flow Cytometry Data analysis workstation: High performance windows based computer with 64GB of RAM and newest version of Flowjo with all plugins and dependencies (R and Rtool + packages) required for unbiased analysis of multiparameter flow cytometry data. Software suit is regularly updated and maintained, we also offer remote connection to the workstation and training in data analysis.
- Biosafety Cabinet: For sterile manipulations and to protect users from potential biohazard exposure.
- Temperature control shaker: For incubation and enzymatic digestion of solid tissues to generate single cell suspension suitable for downstream analysis.
We also offer access to number of validated antibodies which is an easy and economical way to start building large staining panels for your research project.
CODEX Platform
Fully automated, walk-away instrument that generates images of tissue sections stained with large number of antibodies (40+ tested). This platform utilizes a spinning disk confocal microscope which delivers unprecedented quality, subcellular resolution images.
Symphony S6 from BD Biosciences
S6 cell sorter is capable to physically separate up to 6 unique cell population based on expression of up to 30 markers.
Configuration:
5 lasers, 30 fluorescence detectors
UV laser at 355nm, 100mW power, 8 detectors:
Detector name in configuration | Common fluorochrome equivalent |
Filters configuration (LongPass mirror, filter) |
comments |
BUV395 | 380LP, 379/28 | ||
DAPI | FVS440, AF350, Blue Live/Dead | 410LP, 450/50 | |
BUV496 | 450LP, 515/30 | ||
BUV563 | 550LP, 586/15 | ||
BUV615 | 600LP, 610/20 | ||
BUV661 | 635LP, 670/30 | ||
BUV737 | 690LP, 740/35 | ||
BUV805 | 770LP, 820/60 |
Violet laser at 408nm, 100mW power, 8 detectors:
Detector name in configuration | Common fluorochrome equivalent |
Filters configuration (LongPass mirror, filter) |
comments |
BV421 | Pacific Blue | 410LP, 431/28 | |
BV480 or BV510 |
Aqua |
450LP, 470/15
505LP, 525/50 |
BV480/BV510 possible as an alternative configuration |
BV570 | 550LP, 586/15 | ||
BV605 | 600LP, 610/20 | ||
BV650 | 635LP, 670/30 | ||
BV711 | 690LP, 710/50 | ||
BV750 | 740LP, 750/30 | ||
BV786 | BV785 | 750LP, 780/60 |
Blue laser at 488nm, 150mW power, 6 detectors:
Detector name in configuration | Common fluorochrome equivalent |
Filters configuration (LongPass mirror, filter) |
comments |
BB515 | FITC, AF488 | 505LP, 515/20 | |
BB630 | 600LP, 610/20 | ||
BB660* | 635LP, 670/30 | ||
BB700* | PerCP-Cy5.5 | 690LP, 710/50 | |
BB755* | 730LP, 750/30 | ||
BB790* | 770LP, 780/60 |
Yellow-Green laser at 561nm, 150mW power, 5 detectors:
Detector name in configuration | Common fluorochrome equivalent |
Filters configuration (LongPass mirror, filter) |
comments |
PE | 570LP, 586/15 | ||
PE-CF594 | PE/Dazzle594 | 600LP, 610/20 | |
PE-Cy5* | 650LP, 670/30 | ||
PE-Cy5.5* | 690LP, 710/50 | ||
PE-Cy7* | 750LP, 780/60 |
Red laser at 638nm, 140mW power, 3 detectors:
Detector name in configuration | Common fluorochrome equivalent |
Filters configuration (LongPass mirror, filter) |
comments |
APC | AF647 | 650LP, 670/30 | |
APC_R700 | AF700, | 690LP, 710/50 | |
APC-Cy7 | APC/Fire750, APC-H7 | 750LP, 780/60 |
Cytek Aurora
Aurora is a new type of flow cytometry analyzer; it works by measuring full emission spectrum from each laser (thus the name: spectral flow cytometer) and uses unmixing algorithm to calculate individual fluorochrome contribution within emission of all fluorochromes in flow cytometry panel of antibodies.
Practically it means less restriction in fluorochromes options, ability to combine fluorochromes with similar emission profile which at the end allow us to create bigger panels with great signal to noise ration.
With 64 individual detectors theoretical number of markers analyzed simultaneously on Aurora is 62, currently we are using 42 colors high quality and modular flow cytometry panel for blood samples on Aurora. Similar panels are in development for different tissues.
Configuration:
5 lasers, 64 detectors (channels)
UV laser at 355nm, 20mW, 16 channels covering spectrum from 365 to 829 nm.,
Violet laser at 405nm, 100mW, 16 channels from 420 to 829 nm.
Blue laser at 488nm, 50mW, 14 channels from 498 to 829 nm.
Yellow-Green laser at 561nm, 50mW, 14 channels from 567 to 829 nm.
Red laser at 640nm, 80mW, 8 channels from 652 to 829 nm.
Aurora is also equipped with plate loader which allows for automated runs of up to 96 samples at once.
New and very useful function on Aurora is volumetric sensor which allows for absolute quantification of any gated populations (counts per ul)
Good starting point for new Aurora users is Cytek website:
https://cytekbio.com/pages/aurora#tab-overview
Great tool for panel design for Aurora is full spectrum viewer:
https://spectrum.cytekbio.com/
And of course any additional questions related to Aurora will be answered by HDID core staff, we can also schedule more advanced training and address questions related to specific project.