Collaborations at UChicago
Aaron Dinner
Aaron Dinner’s lab offers the mathematic framework to understand the behavior of chemokine polymerization.
Key publications
Structural basis for oligomerization and glycosaminoglycan-binding of CCL5 and CCL3.
Dinner lab website: https://dinner-group.uchicago.edu/
Tony Kossiakoff
Tony Kossiakoff is the king of synthetic antibodies that have facilitated several structural studies.
Key publications
Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination
Kossiakoff lab website: https://kosslab.uchicago.edu/
David Kovar
David Kovar is our resident actin and TIRF microscopy expert. Our work revealed that ExoY, a toxin produced by Pseudomonas aeruginosa, directly bundles actin filaments.
Key publications
Pseudomonas aeruginosa exoenzyme Y directly bundles actin filaments.
Kovar lab website: https://voices.uchicago.edu/kovarlab/
Deborah Nelson
We have collaborated to understand the regulation of ion channels by G proteins.
Key publications
The Inwardly Rectifying K+ Channel Subunit GIRK1 Rescues the GIRK2 weaver Phenotype
Nelson lab website: https://voices.uchicago.edu/nelsonlab/
Marsha Rosner
We collaborate to understand how anthrax edema factor and human insulin degrading enzyme work.
Key publications
Anthrax edema factor potency depends on mode of cell entry
Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism
Anthrax Edema Toxin Inhibits Endothelial Cell Chemotaxis via Epac and Rap1
Rosner lab website: https://rosnerlab.com/
Tobin Sosnick
We explore unfoldase activity of insulin degrading enzyme using ubiquitin and mutants
Key publications
Ubiquitin Is a Novel Substrate for Human Insulin-Degrading Enzyme
Sosnick lab website: http://sosnick.uchicago.edu/
Xiaoyang Wu
We help each other to better our research.
Key publications
In vivo epidermal migration requires focal adhesion targeting of ACF7
Wu website: https://benmay.uchicago.edu/faculty/xiaoyang-wu-phd
Minglei Zhao
Minglei Zhao is our cryoEM expert. He taught us everything we know about single particle analysis and solves all the weird problems we can’t figure out.
Key publications
Structural analysis of Mycobacterium tuberculosis M13 metalloprotease Zmp1 open states
Zhao lab website: https://zhaolab.uchicago.edu/
Collaborations outside UChicago
Bridget Carragher and Clinton Potter
Bridget and Clint have taught us several state-of-the-art cryoEM/ET techniques that we have utilized to gain structural insights into macromolecular complexes.
Key publications
Affiliation(s):
National Resource for Automated Macromolecular Microscopy (NRAMM): https://nramm.nysbc.org/
National Center for CryoEM Access and Training (NCCAT): https://nccat.nysbc.org/
National Center for In-situ Tomographic Ultramicroscopy (NCITU): https://ncitu.nysbc.org/
Benoit Deprez and Rebecca Deprez-Poulain
We collaborate to characterize small molecule modulators of human insulin degrading enzyme.
Key publications
Affiliation: Pasteur Institute
Jan Florian
We collaborate to address the catalytic mechanism of HIV protease using MD simulation
Key publications
Affiliation: Loyola University
Pierre Goossens and Michele Mock
We collaborate to study how anthrax toxins work.
Key publications
Noninvasive Imaging Technologies Reveal Edema Toxin as a Key Virulence Factor in Anthrax
Affiliation: Pasteur Institute
Andrzej Joachimiak
We collaborate for the structural analysis of human insulin degrading enzyme
Key publications
Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism
Affiliations: Advanced Photon Source, Argonne National Laboratory
Sheng Li
Sheng Li is an expert in hydrogen deuterium exchange mass spectrometry who works with us to understand the interaction between enzymes and substrates
Affiliations: University of California, San Diego
David Liu
We collaborate to discover inhibitors of of human insulin degrading enzyme.
Key publications
Anti-diabetic activity of insulin-degrading enzyme inhibitors mediated by multiple hormones
Affiliations: Harvard University
Dennis Selkoe
We collaborate to discover inhibitors of human insulin degrading enzyme.
Key publications
Designed inhibitors of insulin-degrading enzyme regulate the catabolism and activity of insulin
Affiliations: Harvard University
Roland Siefert
We collaborate to study the nucleotidyl cyclase activity of bacterial enzymes.
Affiliations: Medizinische Hochschule Hannover