Fatih Abasiyanik is a staff scientist at Single Cell Immunophenotyping Core/Chevrier Lab, Pritzker School of Molecular Engineering, The University of Chicago.

This website contains his personal interests, work experiences, skills, news, contact info, etc.

Contact
Mailing Address: PME, IGSB, 10120, 900 E 57th, 60637, Chicago, IL, US
Email: abasiyanik at uchicago dot edu
Tel: 773.834.8521 Linkedin: https://www.linkedin.com/in/abasiyanik

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Fatih Abasiyanik has been living in Chicago since 2017. He is a staff scientist at the Single Cell Immunophenotyping Core and Core Manager. He published +40 papers, supervised over 25 graduate students, and took a critical role (adviser, partner, etc.) in more than 7 start-up companies. He recently filled out a provisional patent application.

Announcement

Contents

• • Research Interest
  • Working Experience
  • Education:
  • Courses/ Workshops:

Research Interest:

1. 1. 1. Infectious Diseases
         • Sepsis and Septic Shock
         • Helicobacter pylori-Gastrointestinal Diseases
         • HPV and head/neck cancer
         • SARS CoV-2
         • NGS Technologies

• Development of bioanalytical tools/assays/methods (immunoassays, DNA-based PCR technologies, NGS methods, biosensors, etc.) to analyze biomarkers (i.e., DNA, RNA, protein) in biological samples (saliva, blood, food, and environmental samples).
  • Host biomarker analysis (e.g., cytokines)
  • Pathogen biomarker detection (e.g., DNA, RNA, antigen)
  • Food analysis and food policy
  • Pollutant detection
• Data Science and Analysis of Medical Data
  • Prognostic and diagnostic-related data analysis
  • Prediction of disease outcome based on internal and external data (measurements) (i.m.: symptoms, lab data, patient info, etc.) (e.m.: environmental data, weather, and related data, etc.)
• Formal/Informal biotech education and training of educators
  • Biotech Technology Transfer and Enterpronuial Ecosystem
  • Design Thinking
  • Idea incubation
  • Third Generation Universities and design of the undergraduate curriculum to graduate students as a part of the entrepreneurial ecosystem.

• Working Experience:

  • • 1. Staff Scientist, Single-Cell Immunophenotyping Core, and Chevrier Lab, The University of Chicago, 2021-current
      2. Research Professional 2017 – 2021
         PME, The University of Chicago, Chicago, IL, USA
      3. Associate Prof and Vice Dean of Medical School August/2016 – January /2017
         Alatoo International University, Bishkek, Kyrgyzstan (KG)
      4. Associate Prof, Program Chair of Genetics and Bioengineering Department
         Engineering Faculty, Fatih University, Istanbul, Turkey
      5. Associate Prof, Founding Chair of Biotechnology Ph.D. Program
         Engineering Faculty, Fatih University, Istanbul, Turkey
      6. Associate Prof, Vice Dean, Engineering Faculty October /2011 – December/2012Fatih University, Istanbul, Turkey
      7. Assistant/Assoc. Prof, Vice-Chair, Genetics, and Bioengineering Department January /2007 – December/2014
         Fatih University, Istanbul, Turkey
      8. Assistant. Prof, Chairman, Biology Department
         Fatih University, Istanbul, Turkey
      9. Instructor, Biology Department
         Fatih University, Istanbul, Turkey
      10. Research and Teaching Assistant, Biology Department
          Fatih University, Istanbul, Turkey
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  Education:

  • • 1. BSE, Ankara University, Agricultural Engineering
      2. MSc, Fatih University, Medical Microbiology
      3. Ph.D., Gebze Institute of Technology, Biochemistry, 2005

  Courses/ Workshops:

  • • • Java Programing Language
      • SPLC related tools: Selenium, Maven, Cucumber, TestNG, etc.
      • Entrepreneurship for Science and Medicine, Polsky Center for Entrepreneurship and Innovation at Chicago Booth,  The University of Chicago
      • Intro to Venture Capital: A toolkit for analyzing and financing startups, Polsky Center for Entrepreneurship and Innovation at Chicago Booth,  The University of Chicago
      • Certificated Work training on different topics at the Chicago University
        • Animal care and use procedure certification
        • Data security and privacy certification
        • Rodent euthanasia
        • Occupational health and safety information module for animal users
        • Human Research Course for the staff
        • Harassment and Discrimination Prevention
      • Whole-genome sequencing of bacterial genomes: tools and applications course, Coursera, 2019
      • Phyton  Programming Essentials Course, Coursera, 2019
      • Phyton for Data Science Course, Coursera, 2019
      • Phyton for Data Science and AI Course, Coursera, 2019
      • Open Meeting Act on-line training, Office of the Attorney General State of Illinois, 2017
      • Databases and SQL for Data Science Course
      • World Future Forum, Chicago, US 04/25-26/2019
      • Illinois Charter School Conference 2018, Chicago, US 11/15/2018
      • OPEN Chicago Annual Business Conference 2018, Chicago, US 11/10/2018
      • Open Meeting Act on-line training, Office of the Attorney General State of Illinois,
      • Halal Food Conference, Malaysia
      • Computer-Aided Drug Design, Koc University,
      • The use of bioinformatics in genomics workshop, COMSTECH, Pakistan 8/19/-9/2/ 2006
      • The practical and theoretical courses on the basic protein purification techniques, Genetic Engineering and Biotechnology Research Institute, TUBITAK, Gebze, Turkey

   

   

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