About
Core Directors:
Yoav Gilad, PhD – Faculty Director
Pieter Faber, Ph.D. – Technical Director
pfaber@bsd.uchicago.edu
773.834.8420
Core staff contact information:
Please read the Next Generation Sequencing, Single Cell / Spatial Transcriptomics and / or Micro-array pages first, then use one of the email addresses below to contact the Facility
Leadership (general): bsdgenomicsconsult@uchicagomedicine.org
Leadership (individual): pfaber@uchicago.edu (Pieter Faber, Director, NGS, Single Cell / Spatial, Arrays)
lscarpitta@uchicago.edu (Lindsay Scarpitta, Associate Director, NGS)
Next Gen Sequencing: Genomics@bsd.uchicago.edu
10X Genomics: 10xGenomics@bsd.uchicago.edu
NanoString GeoMx: nanostring@bsd.uchicago.edu
Illumina Micro-arrays: GCFarrays@bsd.uchicago.edu
The Genomics Core Facility is located in the Knapp Center for Biomedical Discovery and directed by Dr. Yoav Gilad, Professor in the Department of Human Genetics. In addition to Dr. Gilad the core has a dedicated staff of 11 people including 3 PhD level scientists. The major services provided are Next Generation DNA Sequencing, DNA microarrays and Sanger DNA Sequencing. For single cell applications the Facility operates a 10X Genomics Chromium Controller, a Takara iCell 8 and a MissionBio Tapestri to generate NGS libraries.
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Next Generation Sequencing: The Facility utilizes Illumina MiSEQ, NextSeq500, HiSEQ 4000 and NovaSEQ6000 instruments to perform DNA sequencing (whole genome, ChIP, Exome and other) and RNA sequencing services.
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Microarray Analysis: The Facility owns and operates an Illumina IScan
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Sanger DNA Sequencing and Genotyping: The Facility operates two Applied Biosystems 3730XL and one 3130XL genetic analyzers for small and high throughput users.